"Jumping" DNA: A Tool for Finding Cancer Genes Researchers have developed a new method of inducing cancer in mice and then rapidly identifying the genes involved. The mice are engineered to carry bits of DNA called transposons that, in the presence of a particular protein, jump randomly around the chromosomes of mouse cells, occasionally landing in genes and causing mutations. As genetic mutations accumulate, the mice develop aggressive tumors and die. Researchers can pinpoint which genes were mutated by tracking molecular "tags" that mark where the transposons inserted themselves. Commonly mutated genes in mouse tumors may be versions of cancer genes in people. "We think this is a powerful way to identify cancer genes for many different cancers," says Dr. Neal Copeland of the Mouse Cancer Genetics Program in the National Cancer Institute's (NCI's) Center for Cancer Research. "A number of the cancer genes we have found so far in the mice are known cancer genes in humans." Read more 1 The Cancer Genome: An Important Project for a New Era Why do colon polyps in some patients never amount to more than a benign nodule, while in other patients they progress to a mortal threat? Why do two patients with the "same" type and stage of breast cancer respond so differently to the same treatment? The answers lie in gaining a deeper understanding of the genetic differences between cancer types. Working with the National Human Genome Research Institute (NHGRI), NCI hopes to undertake a project to characterize the human cancer genome, which we believe will allow us to gain such an understanding and much more. Although we know more about the molecular basis of many cancers than we did just 5 years ago, the heterogeneity of these approximately 200 diseases has precluded a comprehensive understanding of the genetic aberrations that fuel them. A more systematic understanding could elucidate the cellular pathways that spur cancer cell growth and enable their spread throughout the body. This information, in turn, will provide a catalog of therapeutic targets and allow clinical trials to focus on patients who are most likely to respond to an agent based on knowledge of patients' tumor genetics. And these are just some of the expected benefits. Read more 2
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"Jumping" DNA: A Tool for Finding Cancer Genes Researchers have developed a new method of inducing cancer in mice and then rapidly identifying the genes involved. The mice are engineered to carry bits of DNA called transposons that, in the presence of a particular protein, jump randomly around the chromosomes of mouse cells, occasionally landing in genes and causing mutations. As genetic mutations accumulate, the mice develop aggressive tumors and die. Researchers can pinpoint which genes were mutated by tracking molecular "tags" that mark where the transposons inserted themselves. Commonly mutated genes in mouse tumors may be versions of cancer genes in people. "We think this is a powerful way to identify cancer genes for many different cancers," says Dr. Neal Copeland of the Mouse Cancer Genetics Program in the National Cancer Institute's (NCI's) Center for Cancer Research. "A number of the cancer genes we have found so far in the mice are known cancer genes in humans." The researchers have also identified some potentially novel cancer genes. One of the new method's appealing features is that no prior knowledge about the genetics of a tumor is required to search for genes. The project was started by Drs. David Largaespada and Adam Dupuy at the University of Minnesota in Minneapolis in 1997. A few years ago, Dr. Dupuy brought the transposon technology to NCI, where he has been working with Drs. Copeland and Nancy Jenkins. The Minnesota and NCI groups collaborated while testing the method in different types of mice. Regardless of genetic background, the mice all died within 120 days, and some developed multiple tumors, according to findings in the July 14 Nature. Dr. Largaespada began the project just as colleagues at the University of Minnesota had created a modified transposon using a version from salmon. Like almost all DNA transposons in vertebrates, it had not functioned for millions of years, but the researchers eliminated genetic mutations that had rendered it immobile, causing an "awakening." Named Sleeping Beauty, the transposon has been used to induce mutations in the sperm and eggs of mice. But the transposon was not active enough to cause tumors, so the challenge was to increase the frequency of movement from one chromosomal location to another. The researchers succeeded, and the new Sleeping Beauty transposon system can cause tumors in a variety of tissues throughout the lifetime of a mouse, providing another tool for finding cancer genes and potential leads for treatments. "In some mice, clusters of gene mutations accumulate over time, and you begin to see a tumor's genetic 'fingerprint,'" says Dr. Largaespada. "This is important because the most effective cancer treatments may be combinations of drugs that attack each mutant gene product." Dr. Dupuy recently modified the system so that Sleeping Beauty can be made to jump in specific tissues rather than around the whole body. The researchers are developing mice that can be used to investigate breast, colon, and prostate cancer in people. The mice could also help researchers sift through the avalanche of mutations routinely identified in human tumors. For example, the proposed cancer genome project, which is in a pilot project planning phase, will need tools for identifying mutations that actually contribute to the disease, as opposed to just being present in tumors. By Edward R. Winstead |
The Cancer Genome: An Important Project for a New Era
Although we know more about the molecular basis of many cancers than we did just 5 years ago, the heterogeneity of these approximately 200 diseases has precluded a comprehensive understanding of the genetic aberrations that fuel them. A more systematic understanding could elucidate the cellular pathways that spur cancer cell growth and enable their spread throughout the body. This information, in turn, will provide a catalog of therapeutic targets and allow clinical trials to focus on patients who are most likely to respond to an agent based on knowledge of patients' tumor genetics. And these are just some of the expected benefits. Embarking upon such an ambitious venture requires significant planning and discussion. As such, we're taking a phased approach to ensure that the appropriate systems, technologies, and processes for success can and will be developed, and to confirm that we can generate the sort of data and insights we expect. The project began last week with a 3-day workshop involving some of the world's leading experts in areas such as cancer genomics, bioinformatics, microarray and proteomic technologies, and bioethics, as well as members of the advocacy community. Participants discussed issues with the aim of identifying the best approaches to characterizing the cancer genome - ones that will first be tested in a 3-year pilot. Plans for a pilot would have to be approved by key NCI and NHGRI advisory boards. One focus of the pilot would be technology development. Although the Human Genome Project, in addition to providing the baseline catalog of human DNA sequences, resulted in tremendous advances in sequencing and other technologies, additional improvements are required to ensure that a project of this scale can be completed at an acceptable cost within a reasonable time frame. For example, informatics needs will include systems for managing the collection, integration, storage, and dissemination of tissue samples, and the clinical and genomic data associated with them. And new analytical tools will be needed to integrate and interpret experimental data on genomic alterations. The development of such technologies would be integrated into other components of NCI's advanced technologies portfolio. Because the project would involve the collection of patient tissue samples, for example, it would enhance NCI's efforts to build stronger biorepositories. At its heart, this project is about a vision to better understand and change the face of cancer. With proper planning and reliance on the wealth of intellectual talent available in the global biomedical research community, I believe the cancer genome project could fundamentally alter patient treatment by speeding the arrival of truly individualized molecular oncology. Dr. Andrew C. von Eschenbach |
Testing Shark Cartilage as a Cancer Drug
The drug, AE-941 (Neovastat), was developed by the pharmaceutical company Aeterna Zentaris of Quebec City. Unlike shark products in health food stores and on the Internet, it's been through the same development process as other pharmaceutical drugs and is available only through the trial. "This is an interesting natural product," says Dr. Scott Saxman of the Cancer Therapy Evaluation Program at NCI, which is collaborating with other NCI programs to sponsor the trial. Studies of the drug in mice suggested that it impairs blood vessel growth, or angiogenesis, through various mechanisms. Long before shark cartilage became a folk remedy, researchers were investigating cartilage in efforts to develop cancer drugs that kill tumors by inhibiting the blood vessels that supply them with nutrients. Cartilage lacks blood vessels and can prevent their growth. The research has been done mainly with shark cartilage, as opposed to another type, not because sharks are resistant to cancer (they do get cancer), but because they are a reliable source of the material. Their skeletons are made almost entirely of cartilage.
In the trial, patients with non-small-cell lung cancer will either receive AE-941 or a placebo while undergoing chemotherapy and radiation treatments. About 360 patients out of a planned 750 are enrolled, and there are no results yet. The trial is funded by NCI and the National Center for Complementary and Alternative Medicine. (In an unrelated trial, patients with advanced kidney cancer did not benefit from AE-941.) No one knows how many cancer patients consume shark products, but surveys in the late 1990s reported that more than 25 percent of some patient populations used them as complementary or alternative medicine (CAM). Around that time, NCI decided to evaluate two very different products: AE-941, which had science behind it but was not in use; and Benefin, a powder extract already used by patients. "The combination of the two trials was intended to provide a better picture of products that have rarely been scientifically evaluated," says Dr. Jeffrey White, director of NCI's Office of Cancer Complementary and Alternative Medicine. The Benefin trial recently closed early because enrollment was low and preliminary results were discouraging. "We didn't see any evidence of a benefit, and the extract wasn't well tolerated," says Dr. Charles Loprinzi, of the Mayo Clinic, who led the trial. Reporting their findings in the July 1 Cancer, the researchers say that well-designed trials of other cartilage substances, such as AE-941, may well succeed. Dr. Loprinzi, who has evaluated a dozen CAM agents derived from natural products, views cartilage as just another source of potential anticancer agents. The process of creating AE-941 - by purifying a substance to concentrate biologically active molecules - is basically what cancer researchers have done for years, notes Dr. Andrew Vickers, of Memorial Sloan-Kettering Cancer Center, who has written about CAM products. "The lesson is that to develop agents for cancer you need to be very careful about it," Dr. Vickers says. "You can't just make global claims like, 'shark cartilage cures cancer.'" False claims about sharks rarely getting cancer and exaggerated reports of Cuban cancer patients benefiting from shark cartilage ignited the fad in the early 1990s. It persists, says Dr. Vickers, because patients who are not doing well will always want to try something else, and these products are widely available in stores and on the Web. "People do take over-the-counter natural products," says Dr. Saxman. "And there's evidence that some of these products can enhance or interfere with other medications, so patients need to inform their doctors and discuss whether they should be taking them." According to Aeterna Zentaris, no sharks are killed to manufacture AE-941; the cartilage comes from the remains of sharks slaughtered for meat. Nonetheless, in the last 15 years, global shark populations have declined significantly, and researchers attribute this to overfishing and rising consumer demand for shark products. Of course, if AE-941 proves useful against cancer, researchers could try to create a synthetic version, removing sharks from the process entirely. By Edward R. Winstead |
Letter of Intent Receipt Dates: Nov. 21, 2005; Nov. 21, 2006; Nov. 21, 2007. Application Receipt Dates: Dec. 21, 2005; Dec. 21, 2006; Dec. 21, 2007 This funding opportunity will use the D43 award mechanism. For more information, see http://cri.nci.nih.gov/4abst.cfm?initiativeparfa_id=3098. Inquiries: Dr. Jeanne McDermott - mcdermoj@mail.nih.gov PAR-05-141: Basic and Preclinical Research on Complementary and Alternative Medicine R15 Application Receipt Dates: Sept. 25, 2005; Jan. 25, May 25, and Sept. 25, 2006; Jan. 25, May 25, and Sept. 25, 2007; Jan. 25 and May 25, 2008 This funding opportunity will use the R01, R21, and R15 award mechanisms. For more information, see http://cri.nci.nih.gov/4abst.cfm?initiativeparfa_id=3099. Inquiries: Dr. Wendy Smith - smithwe@mail.nih.gov; Dr. Cindy Davis - davisci@mail.nih.gov PA-05-142: Biobehavioral Methods to Improve Outcomes Research This funding opportunity will use the R01 and R21 award mechanisms. For more information, see http://cri.nci.nih.gov/4abst.cfm?initiativeparfa_id=3100. Inquiries: Dr. Paige McDonald - Mcdonalp@mail.nih.gov |
Chemotherapy for Recurrent or Treatment-Resistant Lymphomas Name of the Trial
Why Is This Trial Important? In this trial, researchers are trying to determine whether a new drug called UCN-01 will help kill cancer cells in patients who have a type of lymphoma called anaplastic large cell lymphoma. This type of lymphoma starts in white blood cells called T cells. Anaplastic lymphoma primarily affects children. UCN-01 belongs to a group of drugs called protein kinase inhibitors. Protein kinases are enzymes in cells that help activate or deactivate other proteins, which may play a role in tumor cell growth. "Protein kinases are like switches that turn other proteins on or off," said Dr. Wilson. "A number of tumor cells have these switches abnormally turned on or off, and this abnormal activity contributes to the survival of the tumor. "In anaplastic large cell lymphoma, a protein kinase called ALK is turned on all the time. We hope that UCN-01 will inhibit the action of this abnormally activated kinase and cause the tumor cell to enter apoptosis, or programmed cell death. "We are also interested in seeing if this drug will be useful against other T-cell lymphomas." Who Can Join This Trial? Where Is This Trial Taking Place? Contact Information An archive of "Featured Clinical Trial" columns is available at http://cancer.gov/clinicaltrials/ft-all-featured-trials. |
NCI Testifies on Radiation Effects from Nuclear Weapons Testing NCI's estimates were first presented publicly to a House committee on May 25 (NCI Cancer Bulletin, June 7 3). At the July hearing, Dr. Mabuchi reiterated that NCI's estimates are highly uncertain due to limitations in radiation dose estimates and other factors. By pursuing scientific publication, "our work can be verified, refined, and employed by others," Dr. Mabuchi explained. Detailed information is available at http://dceg.cancer.gov/radia-researchDosimetryRMI.html. New Web Sites Describes BCSC Resources Another new BCSC Web site - http://breastscreening.cancer.gov/benchmarks/diagnostic/ - provides information from a recent paper using BCSC data, "Performance Benchmarks for Diagnostic Mammography" (Radiology 2005;235(3):775-790). The study pooled data from BCSC registries on 332,926 diagnostic mammography exams performed between 1996 and 2001 at 151 facilities. The Web site contains tables and figures with performance parameters pertinent to the auditing of diagnostic mammography exams. Diet and Communication Workshop The workshop was sponsored by the Health Promotion Research Branch of NCI's Division of Cancer Control and Population Sciences and NIH's Division of Nutrition Research Coordination. CNP Grantees Discuss Cancer Disparities CNP will approach disparities reduction through community-based education, training, research, and interventions. The 3-day meeting was organized by NCI's Center to Reduce Cancer Health Disparities. This was the first meeting of the CNP grantees, which represent the diverse communities where cancer rates are disproportionately high: Hispanic, African American, Asian American, Pacific Islanders, Native American, and underserved white populations. The conference goal was to help participants learn about the NCI resources that will enable them to proceed with their projects. Topics that were discussed included NCI's partnership with the Centers for Disease Control and Prevention on early detection, NCI's activities with the Centers for Medicare & Medicaid Services on cancer coverage for Medicare beneficiaries, HPV testing and cervical cancer screening, overviews of NCI's Division of Cancer Control and Population Sciences and Office of Communications, information about career and fellowship opportunities, and NCI's Web-based Cancer Control PLANET resource. |
UNMC Eppley Cancer Center Director: Dr. Kenneth H. Cowan • 986805 Nebraska Medical Center, Omaha, NE 68198 • Phone: 402-559-4090 • Web site: http://www.unmc.edu/cancercenter/ Background
Research Other Notable Programs Physicians at the Center have developed a unique protocol using high-dose radiation and chemotherapy to treat patients with advanced prostate cancer. Center researchers have also received $4.2 million from NCI to develop a blood test for early detection of pancreatic cancer and to develop an international Web-based pancreatic cancer registry. As a nationally known program of excellence in leukemia and lymphoma and 1 of only 14 NCI-funded Centers of Excellence in bone marrow transplantation, the UNMC Eppley Cancer Center has received an $8.5 million grant from NCI to study the molecular characteristics of lymphoma. |
Table of Links | |
| 1 | http://www.cancer.gov/ncicancerbulletin/NCI_Cancer_Bulletin_072605/page2 |
| 2 | http://www.cancer.gov/ncicancerbulletin/NCI_Cancer_Bulletin_072605/page3 |
| 3 | http://www.cancer.gov/NCICancerBulletin/NCI_Cancer_Bulletin_060705/page8 |

Why do colon polyps in some patients never amount to more than a benign nodule, while in other patients they progress to a mortal threat? Why do two patients with the "same" type and stage of breast cancer respond so differently to the same treatment? The answers lie in gaining a deeper understanding of the genetic differences between cancer types. Working with the National Human Genome Research Institute (NHGRI), NCI hopes to undertake a project to characterize the human cancer genome, which we believe will allow us to gain such an understanding and much more.
More than a decade after shark cartilage was first touted as a potential cure for cancer, researchers still do not know whether cartilage has something to offer cancer patients. The best hope for finding out may be a lung cancer study that's testing a drug made from a concentrated extract of shark cartilage.
Principal Investigator