Drug Screening Testing with and without Genomic Testing to Determine an Individualized Treatment Plan in Children and Young Adults with Relapsed Medulloblastoma and Ependymoma
This clinical trial evaluates a combination of directly testing various drugs (drug screening testing) with and without genomic sequencing in a specialized treatment plan for children and young adults with medulloblastoma and ependymoma that has come back after previous treatment (relapsed). This combination of drug screening with and without genomic testing may help control the growth of medulloblastoma and ependymoma tumors.
Inclusion Criteria
- PILOT PHASE: Participants must have recurrent medulloblastoma
- PILOT PHASE: Participants must have surgically accessible disease
- PILOT PHASE: The participant must have recurrent medulloblastoma following at least one prior therapy for initial diagnosis or previous recurrence– surgery followed by high dose chemotherapy with stem cell rescue or multi-modality therapy of surgery, radiation and chemotherapy – prior to study registration
- PILOT PHASE: Participants must have fully recovered from the acute toxic effects of all prior chemotherapy, immunotherapy, or radiotherapy prior to entering this study: * Myelosuppressive chemotherapy: Participants must have received their last dose of known myelosuppressive anticancer chemotherapy at least 3 weeks prior to study registration (6 weeks prior if nitrosourea) * Biologic agent: Participant must have recovered from any toxicity potentially related to the agent and received their last dose of the biologic agent no less than 7 days prior to study registration ** For agents that have known adverse events occurring beyond 7 days after administration, this period must be extended to beyond the time during which adverse events are known to occur. The duration of this interval should be discussed with the study chair ** For biologic agents that have a prolonged half-life, the appropriate interval since last treatment should be discussed with the study chair prior to registration * Monoclonal antibody treatment: At least three half-lives must have elapsed prior to registration. Such participants should be discussed with the study chair prior to registration. For bevacizumab, participants must have received last dose >= 32 days prior to study registration * Bone Marrow Transplant: Participant must be: ** >= 6 months since allogeneic bone marrow transplant prior to registration ** >=3 months since autologous bone marrow/stem cell prior to registration
- PILOT PHASE: Participant must be a candidate for surgical resection or biopsy
- PILOT PHASE: Participants must have had their last fraction of local irradiation to primary tumor >= 12 weeks prior to registration; investigators are reminded to review potentially eligible cases to avoid confusion with pseudo-progression
- PILOT PHASE: Participants must have had their last fraction of craniospinal irradiation or total body irradiation >= 12 weeks prior to registration
- PILOT PHASE: Participants must have at least 14 days after local palliative radiation (small-port)
- PILOT PHASE: Age >= 12 months to =< 39 years of age
- PILOT PHASE: Karnofsky >= 50 for participants > 16 years of age and Lansky >= 50 for participants =< 16 years of age. Participants who are unable to walk because of paralysis, but who are up in a wheelchair, will be considered ambulatory for the purpose of assessing the performance score
- PILOT PHASE: Corticosteroids: Subjects who are receiving dexamethasone or equivalent must be on a stable or decreasing dose for at least 1 week prior to registration
- PILOT PHASE: Peripheral absolute neutrophil count (ANC) >= 1000/mm^3 within 7 days prior to study registration
- PILOT PHASE: Platelet count >= 100,000/mm^3 within 7 days prior to study registration (transfusion independent, defined as not receiving platelet transfusions for at least 7 days prior to enrollment)
- PILOT PHASE: Creatinine clearance or radioisotope glomerular filtration rate (GFR) >= 70mL/min/1.73 m^2 within 7 days prior to study registration OR
- PILOT PHASE: A serum creatinine based on age/sex as follows (within 7 days prior to study registration): * 1 to < 2 years (yrs) 0.6mg/dL (male) or 0.6mg/dL (female) maximum serum creatinine * 2 to < 6 yrs 0.8mg/dL (male) or 0.8mg/dL (female) maximum serum creatinine * 6 to < 10 yrs 1mg/dL (male) or 1mg/dL (female) maximum serum creatinine * 10 to < 13 yrs 1.2mg/dL (male) or 1.2mg/dL (female) maximum serum creatinine * 13 to < 16 yrs 1.5mg/dL (male) or 1.4mg/dL (female) maximum serum creatinine * >= 16 yrs 1.7mg/dL (male) or 1.4mg/dL (female) maximum serum creatinine
- PILOT PHASE: Bilirubin (sum of conjugated + unconjugated) =< 1.5 x upper limit of normal (ULN) for age within 7 days prior to study registration
- PILOT PHASE: Serum glutamate pyruvate transaminase (SGPT) (alanine aminotransferase [ALT]) >= 110 U/L within 7 days prior to study registration
- PILOT PHASE: Serum albumin >= 2 g/dL within 7 days prior to study registration
- PILOT PHASE: The effects of the agents used in this study on the developing human fetus are unknown. For this reason, women of child-bearing potential and men must agree to use adequate contraception (hormonal or barrier method of birth control; abstinence) prior to study entry, for the duration of study participation and 4 months after completion of therapy administration. Should a woman become pregnant or suspect she is pregnant while she or her partner is participating in this study, she should inform her treating physician immediately
- PILOT PHASE: Participants with seizure disorder may be enrolled if seizures are well controlled. Participants on non-enzyme inducing anticonvulsants may be excluded pending interaction(s) with study drug
- PILOT PHASE: A legal parent/guardian or participant must be able to understand, and willing to sign, a written informed consent and assent document, as appropriate
- EFFICACY PHASE: Participants must have recurrent medulloblastoma or recurrent ependymoma previously histologically confirmed. Participants must be experiencing their first or second relapse to be eligible
- EFFICACY PHASE: Participants must have surgically accessible disease
- EFFICACY PHASE: Prior therapy: * The participant must have received at least one prior therapy at the time of initial diagnosis * Relapsed medulloblastoma or relapsed ependymoma are eligible * Participants must have fully recovered from the acute toxic effects of all prior chemotherapy, immunotherapy, or radiotherapy prior to entering this study and would be eligible for surgical resection per institutional guidelines ** Patients must have received their last chemotherapy or biologic agent at least 7 days prior to registration ** Monoclonal antibody treatment: > 21 days prior to registration ** Bevacizumab participants must have received last dose >= 21 days prior to study registration
- EFFICACY PHASE: Participant must be a candidate for surgical resection or biopsy with anticipated ability to obtain the minimum tissue requirements for study
- EFFICACY PHASE: Radiation: * Participants must have: ** Had their last fraction of local irradiation to primary tumor ≥ 12 weeks prior to registration **Had their last fraction of craniospinal irradiation or total body irradiation ≥ 12 weeks prior to registration ** At least 14 days after local palliative radiation (small-port)
- EFFICACY PHASE: Age ≥ 12 months to ≤ 39 years of age
- EFFICACY PHASE: Karnofsky >= 50 for participants > 16 years of age and Lansky >= 50 for participants =< 16 years of age. Participants who are unable to walk because of paralysis, but who are up in a wheelchair, will be considered ambulatory for the purpose of assessing the performance score
- EFFICACY PHASE: Corticosteroids: Subjects who are receiving dexamethasone or equivalent must be on a stable or decreasing dose for at least 1 week prior to registration
- EFFICACY PHASE: Peripheral absolute neutrophil count (ANC) >= 750/mm^3 (within 7 days prior to study registration)
- EFFICACY PHASE: Platelet count >= 75,000/mm^3 (transfusion independent, defined as not receiving platelet transfusions for at least 7 days prior to enrollment) (within 7 days prior to study registration)
- EFFICACY PHASE: Hemoglobin ≥ 8 g/dl (within 7 days prior to study registration)
- EFFICACY PHASE: Creatinine clearance or radioisotope GFR >= 70mL/min/1.73 m^2 or a serum creatinine based on age/sex as follows (within 7 days prior to study registration): * 1 to < 2 years 0.6mg/dL (male) or 0.6mg/dL (female) maximum serum creatinine * 2 to < 6 years 0.8mg/dL (male) or 0.8mg/dL (female) maximum serum creatinine * 6 to < 10 years 1mg/dL (male) or 1mg/dL (female) maximum serum creatinine * 10 to < 13 years 1.2mg/dL (male) or 1.2mg/dL (female) maximum serum creatinine * 13 to < 16 years 1.5mg/dL (male) or 1.4mg/dL (female) maximum serum creatinine * >= 16 years 1.7mg/dL (male) or 1.4mg/dL (female) maximum serum creatinine ** The threshold creatinine values in this table were derived from the Schwartz formula for estimating GFR utilizing child length and stature data published by the Centers for Disease Control and Prevention (CDC)
- EFFICACY PHASE: Total bilirubin =< 1.5 x upper limit of normal (ULN) for age; in presence of Gilbert’s syndrome, total bilirubin =< 3 x ULN or direct bilirubin =< 1.5 x ULN (within 7 days prior to study registration)
- EFFICACY PHASE: Alanine aminotransferase (ALT) =< 3 x ULN (within 7 days prior to study registration)
- EFFICACY PHASE: Aspartate aminotransferase (AST) =< 3 x ULN (within 7 days prior to study registration)
- EFFICACY PHASE: The effects of the agents used in this study on the developing human fetus are unknown. For this reason, women of child-bearing potential and men must agree to use adequate contraception (hormonal or barrier method of birth control; abstinence) prior to study entry, for the duration of study participation and 4 months after completion of therapy administration. Should a woman become pregnant or suspect she is pregnant while she or her partner is participating in this study, she should inform her treating physician immediately
- EFFICACY PHASE: Adequate neurologic function defined as: * Participants with seizure disorder may be enrolled if seizures are well controlled. Participants on non-enzyme inducing anticonvulsants may be excluded pending interaction(s) with study drug
- EFFICACY PHASE: Patients must enroll on PNOC COMP if PNOC COMP is open to accrual at the enrolling institution
- EFFICACY PHASE: A legal parent/guardian or participant must be able to understand, and willing to sign, a written informed consent and assent document, as appropriate
Exclusion Criteria
- PILOT PHASE: Participants who have had chemotherapy or radiotherapy within 3 weeks (6 weeks for nitrosoureas or mitomycin C) prior to entering the study or those who have not recovered from adverse events due to agents administered more than 4 weeks earlier
- PILOT PHASE: Participants who are receiving any other investigational agents
- PILOT PHASE: Participants must be at least 7 days since the completion of therapy with a biologic or small molecule agent. For any agent with known adverse events that can occur beyond 7 days after administration, the period prior to enrollment must be beyond the time during which adverse events are known to occur. Such participants should also be discussed with study chairs
- PILOT PHASE: Participants who are currently taking any anti-cancer direct therapy. Steroids are not considered anti-cancer therapy
- PILOT PHASE: Uncontrolled intercurrent illness including, but not limited to, ongoing or active infection
- PILOT PHASE: Women of childbearing potential must not be pregnant or breast-feeding. A negative serum or urine pregnancy test is required prior to start of therapy
- EFFICACY PHASE: Participants who have had chemotherapy within 3 weeks (6 weeks for nitrosoureas or mitomycin C) prior to entering the study or those who have not recovered from adverse events due to agents administered more than 4 weeks earlier
- EFFICACY PHASE: Participants who are receiving any other investigational agents
- EFFICACY PHASE: Participants must be at least 7 days since the completion of therapy with a biologic or small molecule agent. For any agent with known adverse events that can occur beyond 7 days after administration, the period prior to enrollment must be beyond the time during which adverse events are known to occur. Such participants should also be discussed with study chairs
- EFFICACY PHASE: Participants who are currently taking any anti-cancer direct therapy. Steroids are not considered anti-cancer therapy
- EFFICACY PHASE: Uncontrolled intercurrent illness including, but not limited to, ongoing or active infection
- EFFICACY PHASE: Women of childbearing potential must not be pregnant or breast-feeding. A negative serum or urine pregnancy test is required prior to start of therapy
- EFFICACY PHASE: Participants must not receive any tumor-directed therapy after enrollment, except for surgical resection/ biopsy
Additional locations may be listed on ClinicalTrials.gov for NCT05057702.
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PRIMARY OBJECTIVES:
I. To determine the feasibility of using the results of real-time in vitro drug screening, whole exome sequencing, and ribonucleic acid (RNA) sequencing of participant-derived specimens to guide treatment recommendations by a specialized tumor board, in a clinically-actionable timeframe, for children and young adults with recurrent medulloblastoma. (Pilot phase)
II. To determine the progression-free survival (PFS) in children and young adults with relapsed medulloblastoma and ependymoma who received the specialized tumor board recommendation and compare to historical cohorts. (Efficacy phase)
SECONDARY OBJECTIVE:
I. To determine the safety and describe the toxicity of treating children and young adults with relapsed medulloblastoma and ependymoma according to a specialized tumor board that makes treatment recommendations based on real-time drug screening and genomic sequencing. (Pilot and efficacy phases)
EXPLORATORY OBJECTIVES:
I. To estimate the objective response rate, progression-free survival at 6 months (PFS-6) and overall survival (OS) of relapsed medulloblastoma in children and young adults treated with an individualized treatment regimen. (Pilot phase)
II. To assess quality of life (QOL) measures in participants with relapsed medulloblastoma treated with an individualized regimen. (Pilot phase)
III. To archive tumor and normal deoxyribonucleic acid (DNA) from each participant along with serial blood draw following therapies as biospecimens for later studies to determine whether cell-free (cf)DNA sequences in the participant’s blood serve as biomarkers of tumor burden, response to therapy, or development of drug resistance. (Pilot phase)
IV. To determine the overall survival (OS) and objective response rate (ORR) in children and young adults with relapsed medulloblastoma and ependymoma who received the specialized tumor board recommendation and compare to historical cohorts. (Efficacy phase)
V. To generate patient derived xenograft (PDX) models of relapsed medulloblastoma and ependymoma to facilitate future in vivo testing of therapeutic agents. (Efficacy phase)
VI. To assess the correlation between available genomic data (whole exome sequencing [WES] and RNA sequencing [seq]) and patient outcomes, evaluating its potential complementary role in guiding therapeutic decisions alongside the primary drug screening approach. (Efficacy phase)
VII. To archive tumor and normal DNA from each participant along with serial blood draw following therapies as biospecimens for later studies to determine whether cfDNA sequences in the participant’s blood serve as biomarkers of tumor burden, response to therapy, or development of drug resistance. (Efficacy phase)
OUTLINE: This is a pilot phase study followed by an efficacy phase study.
PILOT PHASE (CLOSED TO ACCRUAL 06/24/2024): Patients undergo collection of tumor tissue and blood samples during standard of care (SOC) surgery. Patients' tumor tissue and blood samples then undergo drug screening testing and genetic testing via WES and RNAseq. A specialized tumor board made up of experts in pediatric neuro-oncology from around the world then meets to review the testing results and may recommend up to 4 Food and Drug Administration (FDA) approved drugs. Patients then receive the drug(s) per the treating physician in the absence of disease progression or unacceptable toxicity. Additionally, patients undergo magnetic resonance imaging (MRI) and blood sample collection throughout the study as well as cerebrospinal fluid (CSF) sample collection on study.
EFFICACY PHASE: Patients undergo collection of tumor tissue during SOC surgery. Patients' tumor tissue then undergoes drug screening testing. A specialized tumor board made up of experts in pediatric neuro-oncology from around the world then meets to review the testing results and may recommend up to 4 FDA approved drugs. Patients then receive the drug(s) per the treating physician in the absence of disease progression or unacceptable toxicity. Additionally, patients undergo MRI and blood sample collection throughout the study as well as CSF sample collection on study.
After completion of the study treatment, patients are followed up at 30 days and then every 3 months for up to 5 years.
Trial PhaseNo phase specified
Trial TypeNot provided by clinicaltrials.gov
Lead OrganizationUniversity of California San Francisco
Principal InvestigatorSabine Mueller
- Primary ID21083
- Secondary IDsNCI-2021-09726, 21-34147, PNOC027
- ClinicalTrials.gov IDNCT05057702