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Projects Funded Through ITCR

The Informatics Technology for Cancer Research (ITCR) program makes new awards every year to support the early-stage, advanced development, and sustainment of informatics tools and resources that meet the needs of basic, translational, and clinical cancer research. 

Award Type Award Year Investigator(s) Institution(s) Project Status
R21 2024 Li Chen, Chi Wang University of Kentucky Statistical Methods for Identification and Evaluation of Predictive Biomarkers in Cancer Active
U01 2024 Timothy Griffin, Pratik Jagtap, Alexey Nesvizhskii University of Minnesota, University of Michigan The immunoPeptidoGenomic (iPepGen) informatics resource forimmuno-oncology research Active
U24 2024

Levi Waldron, Sean Davis

Graduate School of Public Health and Policy, University of Colorado Denver Cancer Genomics: Integrative and Scalable Solutions in R/Bioconductor Active
U01 2024 Alexander Krasnitz Cold Spring Harbor Laboratory Computational tools for accurate inference of genetic ancestry from cancer-derived molecular data Active
R21 2024 Dinler Antunes University of Houston Structure-guided cancer immunotherapy design with HLA-Arena and CrossDome Active
U01 2023 Kristen Naegle University of Virginia Inferring Kinase Activity from Tumor Phosphoproteomic Data Active
R21 2023

Fuyong Xing,
Bennett Chin

University of Colorado Denver, 
Duke University

Geles: A Novel Imaging Informatics System for Generalizable Lesion Identification in Neuroendocrine Tumors Active
U01 2023

Tin Nguyen, 
Hung Luu

Auburn University, 
University of Pittsburgh

Personalization of graphical models using multi-omics data for subtype discovery and prognosis Active
U01 2023

Hanspeter Pfister,
Sandro Santagata

Harvard Medical School

Visual Analytics for Exploration and Hypothesis Generation Using Highly MultiplexedSpatial Data of Tissues and Tumors Active
R21 2023

Drew Jones

New York University School of Medicine

Deep Learning of Mass Spectrometry Imaging Active
U24 2023

Dexter Pratt

University of California, San Diego

The Network Data Exchange - a Network Commons for Biologists Active
R21 2023

Matthew Schipper
Daniel Spratt

University of Michigan
Case Western Reserve University

Individualized estimates of treatment benefit from hormone therapy for men with prostate cancer Active
U01 2023

Yufei Huang

University of Pittsburgh at Pittsburgh

m6A-suite: an informatics pipeline and resource for elucidating roles of m6A epitranscriptome in cancer Active
U01 2023

Valsamo Anagnostou
Taxiarchis Botsis

Johns Hopkins University

Matching genotypes with personalized therapies: Development of a decision support infrastructure to augment the value of precision medicine Active
U01 2023

Qi Long
Xiaoqian Jiang

University of Pennsylvania

Robust privacy preserving distributed analysis platform for cancer research: addressing data bias and disparities Active
U24 2023

Gordon J. Harris

Massachusetts General Hospital

Extensible Open Source Zero-Footprint Web Viewer for Cancer Imaging Research Active
R21 2023

Noemi Andor

H. Lee Moffitt Cancer Center and Research Institute

Engineering model-based systems to monitor and steer subclonal dynamics Active
R21 2023

Daniel Segre,
Ilija Dukovski,
Sergeevich Kirill Korolev

Boston University - Charles River Campus

Spatio-temporal mechanistic modeling of whole-cell tumor metabolism Active
U24 2023

Guilherme Del Fiol,
Kensaku Kawamoto

University of Utah

GARDE: Scalable Clinical Decision Support for Individualized Cancer Risk Management Active
R21 2023

Alejandro Bertolet

Massachusetts General Hospital

GPU-based SPECT Reconstruction Using Reverse Monte Carlo Simulations Active
U24 2023

David Hanauer

University of Michigan

Extending the Capabilities and Reach of EMERSE in Support of Cancer Research Active
U24 2023

Spyridon Bakas

Indiana University

Privacy-Aware Federated Learning for Breast Cancer Risk Assessment Active
R21 2023

Matthew Thompson

California Institute of Technology

Defining therapeutic strategies for boosting T-cell infiltration into cold tumors with spatial proteomics and machine learning Active
U01 2022

Brooke L. Fridley

H. Lee Moffitt Cancer Center and Research Institute

Analytical Tools for Studying the Tumor Microenvironment Leveraging Spatial Transcriptomics Active
U24 2022

Avi Ma'ayan

Icahn School of Medicine at Mount Sinai

ARCHS4: Massive Mining of Publicly Available RNA Sequencing Data Active
U24 2022

Veronica Miriam Rotemberg,
Kivanc Kose

Sloan - Kettering Institute Cancer Research

M-ISIC: A Multimodal Open-Source International Skin Imaging Collaboration Informatics Platform for Automated Skin Cancer Detection Active
R21 2022

Prateek Prasanna,
Chao Chen

State University New York Stony Brook

Computerized platform for interactive annotation and topological characterization of tumor associated vasculature for predicting response to immunotherapy in lung cancer Active
U24 2022

Nikolaus Schultz,
Ethan Cerami,
Chris Sander

Sloan - Kettering Institute Cancer Research

The cBioPortal for Cancer Genomics Active
U24 2022

Rachel Karchin

Johns Hopkins University

OpenCRAVAT: Informatics Tools for High-Throughput Analysis of Cancer Mutations Active
U01 2022

Samuel Volchenboum

University of Chicago

GEARBOx - a multisite clinical trial matching tool for children with relapsed or refractory cancer Active
R21 2022

Travis Steele Johnson,
Jie Zhang

Indiana University- Purdue University at Indianapolis

A deep-transfer-learning framework to transfer clinical information to single cells and spatial locations in cancer tissues Active
R21 2022

Jin Zhang

Washington University

Deep learning in cervical cancer radiogenomics Active
U01 2022

Jacob Oleson

University of Iowa

Development of Small Area Interactive Risk Maps for Cancer Control Efforts Active
U01 2022

Patrick David Schloss,
Marcy J. Balunas

University of Michigan at Ann Arbor

muMS2: an open source R package for analyzing and integrating multi-omics datasets to improve early detection and understanding of colorectal cancer Active
U24 2022

Han Liang,
Rehan Akbani,
Gordon B. Mills

University of Texas MD Anderson Cancer Center

The Cancer Proteome Atlas: an Integrated Bioinformatics Resource for Functional Cancer Proteomic Data Active
R21 2022

Meghan Eileen McGrady

Cincinnati Children's Hospital Medical Center

A Novel Algorithm to Compute Adherence from Electronic Adherence Monitoring Devices Active
R21 2022

Mara Meyer Epstein,
Feifan Liu

University of Massachusetts Medical School- Worcester

Identifying Recurrent Non-Hodgkin Lymphoma in Electronic Health Data Active
R21 2022

Travis J. Osterman,
Christine M. Micheel

Vanderbilt University Medical Center

Oncology Knowledge Rapid Alerts: Integrating Biomarker-Driven Clinical Decision Support for Therapy Selection at Point-of-Care Active
R21 2022

Andrey Ivanov

Emory University

Predicting Actionable Cancer Vulnerabilities Enabled by Mutant-Directed Protein-Protein Interactions Active
R21 2022

Margarida Barroso,
Uwe Kruger

Albany Medical College

Artificial Intelligence Enhanced Cancer Cell Classification Based Organelle Morphology and Topology Active
U01 2022

Malgorzata Marjanska

University of Minnesota

Developing Informatics Tools for Optimized MRS for Brain Cancer Research Active
U01 2022

Pablo Gonzalez Camara

University of Pennsylvania

A Data-Driven Bioinformatics Platform for the Design and Analysis of Multiplexed Antibody-Based Cytometry Experiments in Cancer Research Active
U24 2021

Alessandro Sette,
Bjoern Peters

La Jolla Institute for Immunology

The Cancer Epitope Database And Analysis Resource Active
U24 2021

Vineet Bafna

University Of California, San Diego

Software and algorithms for elucidating the structure, function, and evolution of extrachromosomal DNA Active
U24 2021

Daniel Scott Marcus

Washington University

Sustaining the Integrative Imaging Informatics for Cancer Research (I3CR) Center Active
U24 2021

Jill Mesirov,
James Thomas Robinson

University Of California, San Diego

The Integrative Genomics Viewer (IGV) for Cancer Research Active
U01 2021

Michael Schatz

Johns Hopkins University

Integrative genomic and epigenomic analysis of cancer using long read sequencing Active
U01 2021

Lydia Kavraki,
Gregory Lizee

Rice University

PROTEAN-CR: Proteomics Toolkit for Ensemble Analysis in Cancer Research Active
U24 2021

Jingchun Zhu
David H Haussler

University of California Santa Cruz

Enhance UCSC Xena: extend interactive visualization to ultra-large-scale multi-omics data and integrate with analysis resources Active
R21 2021

Yong Zang

Indiana Unviersity

Curve-free phase I/II clinical trial designs for molecularly targeted agents and immunotherapy Active
R21 2021

Li Zhang

University Of California, San Francisco

Computational approaches to unravel immune receptor sequencing for cancer immunotherapy Active
R21 2021

Yen-Yi Ho

University Of South Carolina At Columbia

scDECO: A novel statistical framework to identify differential co-expression gene combinations systematically using single-cell RNA sequencing data Active
R21 2021

Gavin Ha

Fred Hutchinson Cancer Research Center

Predicting transcriptional signatures and tumor subtypes from circulating tumor DNA Active
R21 2021

Gavin Ha

Fred Hutchinson Cancer Research Center

Predicting transcriptional signatures and tumor subtypes from circulating tumor DNA Complete
R21 2021

Itai Yanai

New York University School Of Medicine

Inferring cell state tumor microenvironment maps by integrating single-cell and spatial transcriptomics Active
U01 2021

Joshua Campbell,
Masanao Yajima

Boston University Medical Campus

Utilizing Bayesian modeling to improve mutational signature inference in large-scale datasets Active
U01 2021

Giuseppe Narzisi

New York Genome Center

Advanced development of Lancet, an emerging tool for complex variant calling in cancer genomics Active
U24 2021

Guergana Savova,
Harry Hochheiser,
Jeremy Warner

Boston Children's Hospital

Cancer Deep Phenotype Extraction from Electronic Medical Records Active
U01 2021

Guanghua Xiao

UT Southwestern Medical Center

Informatics Tools To Analyze And Model Whole Slide Image Data At The Single Cell Level Active
R21 2021

Meliha Yetisgen

University of Washington

Extraction of Symptom Burden from Clinical Narratives of Cancer Patients using Natural Language Processing Active
R21 2021

Lang Li

Ohio State University

An informatics bridge over the valley of death for cancer Phase I trials of drug-combination therapies Active
R21 2021

Jiang Bian,
Yi Guo

University of Florida

Optimizing the Population Representativeness of Older Adults in Cancer Trials Active
U24  2021

Christina Yung,
Lincoln D Stein

Ontario Institute For Cancer Research

Overture: A Multi-Scale Data Platform for Cancer Genomics Research Active
U24 2020

Jill Mesirov,
Pablo Tamayo

University of California, San Diego

GenePattern and GenePattern Notebook: Integrative 'Omic Analysis for Cancer Research Active
U01 2020

Malachi Griffith

Washington University in St. Louis

Informatics Tools for Identification, Prioritization, and Clinical Application of Neoantigens Active
R21 2020

Clemens Grassberger

Massachusetts General Hospital

A Computational Method to Calculate the Radiation Dose to Circulating Lymphocytes Complete
U01 2020

Elana Judith Fertig

Johns Hopkins University

Single-cell and imaging data integration software to spatially resolve the tumor microenvironment Active
U24 2020

Philip Montgomery

Broad Institute, INC.

Advanced development of the Cancer Dependency Map portal (DepMap.org) Active
U01 2020

Ken Chen

University of Texas MD Anderson Cancer Center

Informatics for Functional Integration of Heterogeneous Cancer Genome and Transcriptome Sequencing Data Active
U24 2020

Helen Elizabeth Parkinson,
Terrence Meehan

European Molecular Biology Laboratory

Patient Derived Cancer Model (PDCM) Finder Active
U01 2020

Amanda E Randles

Duke University

Technology for efficient simulation of cancer cell transport Complete
R21 2020

Jennifer Ellen Beane,
Vijaya B Kolachalama

Boston University Medical Campus

PRISTINE: Pre-cancer histology identification of Endobronchial biopsies using deep learning Active
R21 2020

Hildreth Robert Frost

Dartmouth College

Cancer-specific gene set testing Active
R01 2020

Chun-Wei Chen

Beckman Research Institute/City of Hope

Integrative Analyses of Saturation CRISPR Protein Scan Active
U24 2020

Kooresh Isaac Shoghi,
Daniel Scott Marcus

Washington University

Development of an Open-Source Preclinical Imaging Informatics Platform for Cancer Research Active
UE5 2020

Jeffery T Leek,
Jeremy Goecks,
Karriem Sadot Watson,
Sarah J Wheelan

Johns Hopkins University,
Oregon Health & Science University

Scalable multi-mode education to increase use of ITCR tools by diverse analysts Active
U24 2020

Greg Caporaso

Northern Arizona University

Advancing Our Understanding of Cancer and the Human Microbiome with QIIME 2 Active
U24 2020

Benjamin Raphael

Princeton University

Comprehensive and Robust Tools for Analysis of Tumor Heterogeneity and Evolution Active
U01 2020

Satish Viswanath,
Pallavi Tiwari

Case Western Reserve University

RadxTools for Assessing Tumor Treatment Response on Imaging Active
U24 2020

James Eddy,
Jacob Albrecht,
Paul Christopher Boutros

Sage Bionetworks

Advancing Method Benchmarking and Data Sharing Through Crowd-Sourced Competitions in Cancer Research Active
R21 2020

Subhajyoti De

Rutgers Cancer Institute of New Jersey

Inference of Tumor Growth Dynamics Using Genomic Data Complete
U24 2019

Obi Griffith

Washington University

Standardized and Genome-Wide Clinical Interpretation of Complex Genotypes for Cancer Precision Medicine Active
U01 2019

Bruno De Man

General Electric Global Research Center

Open-Access X-Ray and CT Simulation Toolkit for Research in Cancer Imaging and Dosimetry Complete
R21 2019

Jin Chen,
Guo-Qiang Zhang,
Baowei Fei

University of Kentucky,
The University Texas at Dallas

STAN-CT: Standardization and Normalization of CT images for Lung Cancer Patients Complete
R21 2019

Tianxi Cai

Harvard University School of Public Health

Semi-supervised Algorithms for Risk Assessment with Noisy EHR Data Complete
R21 2019

Suvra Pal,
Leili Shahriyari,
Souvik Roy

University of Texas Arlington,
University of Massachusetts Amherst

Data-Driven QSP Software for Personalized Colon Cancer Treatment Complete
U01 2019

Jun Kong,
Fusheng Wang

Georgia State University

Computational Pathology Software for Integrative Cancer Research with Three-Dimensional Digital Slides Complete
U01 2019

Spyridon Bakas

University of Pennsylvania

The Federated Tumor Segmentation (FeTS) Platform: An Intuitive Tool Facilitating Secure Multi-Institutional Collaboration Complete
U24 2019

John Quackenbush

Harvard School of Public Health

WebMeV: A Robust Platform for Intuitive Genomic Data Analysis Active
U01 2019

Melissa Cline

University of California, Santa Cruz

Eliminating Variants of Uncertain Significance in BRCA1, BRCA2 and Beyond Complete
U01 2019

Daniel Rubin,
Jayashree Kalpathy-Cramer

Stanford University,
Massachusetts General Hospital

Distributed Learning of Deep Learning Models for Cancer Research Complete
U01 2019

Wenyuan Li

University of California Los Angeles

Informatics Resources for Liquid Biopsy Research Complete
U24 2019

Clifford Meyer

Dana-Farber Cancer Institute

Developing Informatics Technologies to Model Cancer Gene Regulation Complete
U01 2019

Andrew Janowczyk,
Anant Madabhushi

Case Western Reserve University

HistoTools: A Suite of Digital Pathology Tools for Quality Control, Annotation and Dataset Identification Complete
U24 2018

Jill Mesirov

University of California, San Diego

Supporting and Evolving Gene Set Enrichment Analysis and the Molecular Signatures Database for Cancer Research Active
U01 2018

Jeremy Warner

Vanderbilt University Medical Center

Network Analysis for a Data-Driven Approach to Cancer Care Complete
U24 2018

Jeremy Goecks,
Michael Schatz

Oregon Health and Science University,
Johns Hopkins University

A Federated Galaxy for user-friendly large-scale cancer genomics research Complete
U01 2018

Linda Shapiro,
Joann Elmore

University of Washington

A Unified Machine Learning Package for Cancer Diagnosis Complete
U24 2018

Alexej Abyzov

Mayo Clinic Rochester

Detection of somatic, subclonal and mosaic CNVs from sequencing Active
U24 2018

Bruce Faddegon

University of California, San Francisco

The TOPAS Tool for Particle Simulation, a Monte Carlo Simulation Tool for Physics, Biology and Clinical Research Complete
U01 2018

Lee Cooper,
Christopher Flowers,
Metin Gurcan

Emory University ,
Ohio State University

Informatics Tools for Quantitative Digital Pathology Profiling and Integrated Prognostic Modeling Complete
U24 2017

Guilherme Del Fiol,
Kensaku Kawamoto

University of Utah

Scalable Clinical Decision Support for Individualized Cancer Risk Management Complete
U24 2017

Ian Foster

University of Chicago

Building Protected Data Sharing Networks to Advance Cancer Risk Assessment and Treatment Complete
U24 2017

Nikolaus Schultz,
Ethan Cerami,
Chris Sander

Sloan Kettering Institute for Cancer Research

The cBioPortal for Cancer Genomics Complete
U24 2017

David Hanauer

University of Michigan

Advanced Development and Dissemination of EMERSE for Cancer Phenotyping from Medical Records Complete
U24 2017

Fred Prior,
Joel Saltz,
Ashish Sharma

University of Arkansas,
Stony Brook University,
Emory University

TCIA Sustainment and Scalability - Platforms for Quantitative Imaging Informatics in Precision Medicine Complete
U24 2017

Ian Holmes,
Lincoln Stein

University of California Berkeley

Developing the JBrowse Genome Browser to Visualize Structural Variants and Cancer Genomics Data Complete
U24 2016

Hua Xu,
Ping Yang

University of Texas Health Sci. Center, Houston,
Mayo Clinic - Jacksonville, Florida

Advancing Cancer Pharmacoepidemiology Research Through EHRs and Informatics Complete
U24 2016

Jill Mesirov,
James Robinson

University of California, San Diego

The Integrative Genomics Viewer (IGV): Visualization Supporting Cancer Research Complete
U24 2016

Gabor Marth,
Aaron Quinlan

University of Utah

Monitoring Tumor Subclonal Heterogeneity Over Time and Space Complete
U24 2016

Han Liang,
Gordon Mills

University of Texas MD Anderson Cancer Center

TCPA: an Integrated Bioinformatics Resource for Functional Cancer Proteomic Data/a> Complete
U24 2015

Anant Madabhushi,
Metin Nafi Gurcan ,
Anne Martel

Case Western Reserve University,
Ohio State University,
University of Toronto

Pathology Image Informatics Platform for Visualization, Analysis and Management Complete
U24 2014

Martin Morgan

Roswell Park Cancer Institute

Cancer Genomics: Integrative and Scalable Solutions in R / Bioconductor Active
U24 2014

Trey Ideker

University of California, San Diego

NDEx - the Network Data Exchange, A Network Commons for Biologists Active
U24 2013

Brian Haas

Broad Institute

Trinity: Transcriptome Assembly for Genetic and Functional Analysis of Cancer Active
R21 2019

Eliezer Van Allen

Dana-Farber Cancer Institute

A Statistical Framework to Systematically Characterize Cancer Driver Mutations in Noncoding Genomic Regions Complete
R21 2019

Joshua Campbell

Boston University Medical Campus

Enhanced Deconvolution and Prediction of Mutational Signatures Complete
R21 2019

Paul Marjoram

University of Southern California

Conservation and Functional-Characterization of Tumor Methylation Sites Complete
R21 2019

Emilie Roncali

University of California at Davis

Personalized Dosimetry for Liver Cancer Radioembolization Using Fluid Dynamics Simulation Complete
R21 2019

Fuyong Xing,
Toby Cornish

University of Colorado Denver

Development and Dissemination of KiNet: A Novel Imaging Informatics Tool for Gastrointestinal and Pancreatic Neuroendocrine Tumors Complete
R21 2018

Guo-Qiang Zhang,
Licong Cui

University of Kentucky Research Foundation

An Ontology-driven Faceted Query Engine for the Kentucky Cancer Registry Complete
R21 2018

Kristen Naegle

University of Virginia

Inferring Kinase Activity Profiles from Phosphoproteomic Data Complete
R21 2018

Li-Xuan Qin

Sloan Kettering Institute for Cancer Research

Statistical Evaluation and Selection of Normalization Methods for microRNA Sequencing Data in Cancer Biomarker Studies Complete
R21 2018

Giuseppe Narzisi

New York Genome Center

Somatic variant calling and phasing using colored de Bruijn graphs in heterogeneous tumors Complete
R21 2018

Anjishnu Banerjee

Medical College of Wisconsin

Bayesian learning algorithms for identifying and classifying heterogeneity of cell types in variety of solid tumors Complete
U01 2018

Xiaole Shirley Liu

Dana-Farber Cancer Institute

Bioinformatics Technology to Characterize Tumor Infiltrating Immune Repertoires Complete
U01 2018

Kai Tan

Children's Hospital of Philadelphia

Tools for annotating mutations in the 3D cancer genome Complete
R21 2018

Min Jin Ha,
Veerabhadran Baladandayuthapani

University of Texas MD Anderson Cancer Center,
University of Michigan

Proteomic-based integrated subject-specific networks in cancer Complete
R21 2018

Corey W. Arnold

University of California, Los Angeles

Predicting the Presence of Clinically Significant Prostate Cancer using Multiparametric MRI and MR-US Fusion Biopsy Complete
Contract 2017

Timothy Olsen,
Daniel Marcus

Radiologic, Inc.
Washington University in St. Louis

FDA Compliant Imaging Informatics for Cancer Research Complete
R21 2017

Nathalie Pochet

Brigham and Women's Hospital

Integrative Genomic Framework for Dissecting Regulatory Mechanisms Underlying Hepatocellular Carcinoma Complete
Contract 2017

Trinity Urban,
Gordon Harris

Precision Imaging Metrics,
Harvard Medical School

Cloud-Hosted Clinical Trial Imaging Assessment and Workflow Management System Complete
R21 2017

Samir Parekh

Icahn School of Medicine at Mount Sinai

A network-based approach for personalized treatment of Multiple Myeloma Complete
R21 2017

Simina Boca

Georgetown University

CGDnet: Cancer Gene Drug Network: Using patient-specific drug-gene networks for recommending targeted cancer therapies Complete
U01 2017

Vincent Carey

Brigham and Women's Hospital

Accelerating Cancer Genomics with Cloud-Scale Bioconductor Complete
U01 2017

Daniel Crichton,
Raja Mazumder

Jet Propulsion Laboratory,
George Washington University

Integration of Comprehensive Cancer Mutation and Expression-Associated Data for Biomarker Evaluation and Discovery Complete
R01 2017

Jie Liang,
Yan-Yuan Tseng

University of Illinois at Chicago,
Wayne State University

Database and Tools for Functional Inference and Mechanistic Insight into Somatic Cancer Mutations Complete
R21 2017

William Evan Johnson

Boston University

An interactive analysis toolkit for single cell RNA-seq in cancer research Complete
R21 2016

Xiaodong Wu

University of Iowa

Developing Enabling PET-CT Image Analysis Tools for Predicting Response in Radiation Cancer Therapy Complete
R21 2016

Lydia Kavraki,
Gregory Lizee

Rice University

Structure-Based Selection of Tumor-Antigens for T-Cell Based Immunotherapy Complete
R21 2016

Dongjun Chung,
Linda Kelemen

Medical University of South Carolina

Algorithms for Literature-Guided Multi-Platform Identification of Cancer Subtypes Complete
U01 2016

Obi Griffith

Washington University in St. Louis

Development of Informatics Resources for Interpretation of Clinically Actionable Variants in Cancer Complete
U01 2016

Srinivas Chakra Chennubhotla,
Daryl Sarachan,
Lansing Taylor

University of Pittsburgh

Informatics Tools for Tumor Heterogeneity in Multiplexed Fluorescence Images Complete
U01 2016

Xinshu Grace Xiao

University of California, Los Angeles

Informatics Tools for Single-Nucleotide Analysis of Cancer RNA-Seq Complete
U24 2016

Timothy Griffin

University of Minnesota

A Galaxy-Based Multi-Omic Informatics Hub for Cancer Researchers Complete
U24 2016

Daniel Marcus,
Richard Wahl

Washington University in St. Louis

Integrative Imaging Informatics for Cancer Research Complete
U24 2016

Helen Parkinson

European Molecular Biology Laboratory

The PDX Integrator - Re-Purposing KOMP2 Informatics to Widely Disseminate Data from Patient Derived Xenografts Complete
U24 2016

Rachel Karchin

Johns Hopkins University

Informatics Tools for High-Throughput Analysis of Cancer Mutations Complete
U24 2015

Christos Davatzikos,
Despina Kontos

University of Pennsylvania

Cancer Imaging Phenomics Software Suite: Application to Brain and Breast Cancer Complete
U24 2015

John Weinstein,
Bradley Broom

University of Texas MD Anderson Cancer Center

Next-Generation Clustered Heat Maps for Fluent, Interactive Exploration of Omic Data Complete
U24 2015

David Andrew Gutman,
Lee Cooper

Emory University

Advanced Development of an Open-source Platform for Web-based Integrative Digital Image Analysis in Cancer Complete
U24 2015

Jill Mesirov

University of California, San Diego

GenePattern Notebooks for Cancer Research Complete
U24 2015

John Quackenbush,
Hugo Aerts

Dana-Farber Cancer Institute

Quantitative Radiomics System Decoding the Tumor Phenotype Complete
U01 2015

Lauren Jean O'Donnell

Harvard Medical School

Open Source Diffusion MRI Technology for Brain Cancer Research Complete
U01 2015

Kun Huang

Ohio State University

Informatics Links between Histological Features and Genetics in Cancer Complete
U01 2015

Michael Wigler,
Alexander Krasnitz

Cold Spring Harbor Laboratory

Computational Framework for Single-Cell Genomics of Tumors Complete
U24 2015

Gordon Harris

Harvard Medical School

Extensible Open-Source Zero-Footprint Web Viewer for Oncologic Imaging Research Complete
U01 2014

Benjamin Berman

Cedars-Sinai Medical Center

Software Tools For Regulatory Analysis of Large Cancer Methylome Datasets Complete
U01 2014

Bobbie-Jo Mary Webb-Robertson

Pacific Northwest National Laboratory

Interactive Informatics Resource for Research-driven C Complete
U24 2014

Bruce Rosen,
Jayashree Kalpathy-Cramer

Massachusetts General Hospital

Informatics Tools for Optimized Imaging Biomarkers for Cancer Research & Discovery Complete
U24 2014

Joel Saltz

Stony Brook University

Tools to Analyze Morphology and Spatially Mapped Molecular Data Complete
U24 2014

Guergana Savova

Boston Children's Hospital,
University of Pittsburgh

Cancer Deep Phenotyping Extraction from Electronic Medical Records Complete
R01 2014

Laura Rozek,
Maureen Sartor

University of Michigan

Integrative Epigenomic/Genomic Profiling and Biomarker Discovery in HPV+ and HPV- Complete
U01 2014

Guoqian Jiang

Mayo Clinic - Rochester, Minnesota

caCDE-QA: A Quality Assurance Platform for Cancer Study Common Data Elements Complete
U01 2014

Hong Yu

University of Massachusetts Medical School

EMR Adverse Drug Event Detection for Pharmacovigilance Complete
U01 2014

Jingshan Huang

University of South Alabama

OmniSearch: A Semantic Search Tool for Discovering MicroRNAs' Critical Roles in Human Cancer Complete
U01 2013

Shirley Liu

Dana-Farber Cancer Institute

Developing Informatics Technologies to Model Cancer Complete
U01 2013

Rachel Karchin

Johns Hopkins University

Informatics Tools for High-Throughput Analysis of Cancer Mutations Complete
U01 2013

Elmer Bernstam,
Funda Meric-Bernstam

University of Texas MD Anderson Cancer Center,
University of Texas Health Sci. Center, Houston

Informatics to Enable Routine Personalized Cancer Therapy Complete
U24 2013

Michael Becich

University of Pittsburgh

Advanced Development of TIES-Enhancing Access to Tissue for Cancer Research Complete
U24 2013

David Haussler

University of California, Santa Cruz

Cloud Based Resource for Data Hosting, Visualization and Analysis Using UCSC Cancer Genomics Browser Complete
R01 2013

Joshua Stuart

University of California, Santa Cruz

ESCE: Discovering Molecular Processes Complete
U24 2013

Ron Kikinis,
Andrey Fedorov

Brigham and Women's Hospital,
Harvard Medical School

Quantitative Image Informatics for Cancer Research (QIICR) Complete
R01 2013

Hiroyuki Yoshida

Massachusetts General Hospital

Cloud-Computer-Aided Diagnostic Imaging Decision Support System Complete
R01 2013

William Noble

University of Washington

Interpreting Massive Genomic Data Sets via Summarization Complete
U01 2011

John Quackenbush

Dana-Farber Cancer Institute

MeV: Software for Next Generation Genomic Data Analysis Complete
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