| U01 | 2025 | Bing Zhang, Yongchao Dou | Baylor College of Medicine | Advancing Protein Isoform Analysis through an Integrated Computational Framework | Active |
| U01 | 2025 | Haiyuan Yu, Feixiong Cheng | Cornell University | Deep learning based 3D network biology knowledge portal for precision oncology | Active |
| U01 | 2025 | Pallavi Tiwari, Satish Easwar Viswanath | University of Wisconsin-Madison | Image informatics tools for curation and prognostic modeling in pediatric brain tumors | Active |
| U24 | 2025 | Kooresh Isaac Shoghi, Daniel Scott Marcus | Washington University in St. Louis | Preclinical Imaging XNAT-enabled Informatics (PIXI) Center | Active |
| U24 | 2025 | Guergana Savova, Danielle Bitterman, Harry Hochheiser, Jeremy Lyle Warner | Boston Children's Hospital | Cancer Deep Phenotype Extraction from Electronic Medical Records | Active |
| R21 | 2025 | Hatice Ulku Osmanbeyoglu | University of Pittsburgh | Integrative framework for surface protein imputation for spatial biology of cancer | Active |
| U01 | 2025 | Michael Jungho Lee | University of Massachusetts | MEDUSA(GM): an analysis platform for resolving mechanisms of action for anti-cancer drugs | Active |
| R21 | 2025 | Jayashree Kalpathy-Cramer, Rebecca Bernstein Perkins | University of Colorado Denver | AI algorithm development for cervical cancer screening in low resource settings | Active |
| R21 | 2025 | Yuming Jiang, Fan Yang | Wake Forest University Health Sciences | Towards Interpretable Imaging-based Gastric Cancer Prognosis via Prototypical and Attentional Deep Learning | Active |
| R21 | 2025 | Curtis Huttenhower | Harvard University School of Public Health | Methods for profiling the cancer virome and microbial strain genetics | Active |
| U24 | 2025 | Obi Griffith, Malachi Griffith, Alex Handler Wagner | Washington University in St. Louis; Nationwide Children's Hospital | Accelerating the expert-crowdsourcing of cancer variant interpretation in CIViC | Active |
| U24 | 2025 | Theodore Alexandrov | University of California, San Diego | Advancing METASPACE and Spatial Metabolomics for Cancer Research | Active |
| U24 | 2024 | Jeremy Goecks | Moffitt Cancer Center | Developing a cancer Galaxy computational workbench to meet emerging cancer data analysis needs | Active |
| U24 | 2024 | Paul Macklin, Elana Fertig | Indiana University; University of Maryland | Informing mechanistic rules of agent-based models with single-cell multi-omics | Active |
| U24 | 2024 | Heng Li, Catarina Campbell, Cheng-Zhong Zhang | Dana-Farber Cancer Institute; Broad Institute | Enhancement and further development of informatics methods for long-read cancer sequencing | Active |
| U01 | 2024 | Zhiping Wang | University of Massachusetts Chan Medical School | Integrative Analysis and Visualization Platform for Cancer Regulatory Genomics | Active |
| U01 | 2024 | Johnie Rose | Case Western Reserve University | A Multilevel Data Analytic Solution to Advance Population Cancer Research | Active |
| U01 | 2024 | Emilie Roncali | UC Davis | A liver digital twin for personalized cancer therapy | Active |
| R21 | 2024 | Shikhar Uttam | University of Pittsburgh | Methods for characterizing mechanobiology of the tumor microenvironment landscape | Active |
| R21 | 2024 | Pratik Shah | UC Irvine | Virtual Digital Histopathology with Explainable Deep Learning for Prostate Cancer Diagnosis | Active |
| R21 | 2024 | Li Chen, Chi Wang | University of Kentucky | Statistical Methods for Identification and Evaluation of Predictive Biomarkers in Cancer | Active |
| U01 | 2024 | Timothy Griffin, Pratik Jagtap, Alexey Nesvizhskii | University of Minnesota, University of Michigan | The immunoPeptidoGenomic (iPepGen) informatics resource forimmuno-oncology research | Active |
| U24 | 2024 | Levi Waldron, Sean Davis | Graduate School of Public Health and Policy, University of Colorado Denver | Cancer Genomics: Integrative and Scalable Solutions in R/Bioconductor | Active |
| U01 | 2024 | Alexander Krasnitz | Cold Spring Harbor Laboratory | Computational tools for accurate inference of genetic ancestry from cancer-derived molecular data | Active |
| R21 | 2024 | Dinler Antunes | University of Houston | Structure-guided cancer immunotherapy design with HLA-Arena and CrossDome | Active |
| U01 | 2023 | Kristen Naegle | University of Virginia | Inferring Kinase Activity from Tumor Phosphoproteomic Data | Active |
| R21 | 2023 | Fuyong Xing,
Bennett Chin | University of Colorado Denver,
Duke University | Geles: A Novel Imaging Informatics System for Generalizable Lesion Identification in Neuroendocrine Tumors | Active |
| U01 | 2023 | Tin Nguyen,
Hung Luu | Auburn University,
University of Pittsburgh | Personalization of graphical models using multi-omics data for subtype discovery and prognosis | Active |
| U01 | 2023 | Hanspeter Pfister,
Sandro Santagata | Harvard Medical School | Visual Analytics for Exploration and Hypothesis Generation Using Highly MultiplexedSpatial Data of Tissues and Tumors | Active |
| R21 | 2023 | Drew Jones | New York University School of Medicine | Deep Learning of Mass Spectrometry Imaging | Active |
| U24 | 2023 | Dexter Pratt | University of California, San Diego | The Network Data Exchange - a Network Commons for Biologists | Active |
| R21 | 2023 | Matthew Schipper
Daniel Spratt | University of Michigan
Case Western Reserve University | Individualized estimates of treatment benefit from hormone therapy for men with prostate cancer | Active |
| U01 | 2023 | Yufei Huang | University of Pittsburgh at Pittsburgh | m6A-suite: an informatics pipeline and resource for elucidating roles of m6A epitranscriptome in cancer | Active |
| U01 | 2023 | Valsamo Anagnostou
Taxiarchis Botsis | Johns Hopkins University | Matching genotypes with personalized therapies: Development of a decision support infrastructure to augment the value of precision medicine | Active |
| U01 | 2023 | Qi Long
Xiaoqian Jiang | University of Pennsylvania | Robust privacy preserving distributed analysis platform for cancer research: addressing data bias and disparities | Active |
| U24 | 2023 | Gordon J. Harris | Massachusetts General Hospital | Extensible Open Source Zero-Footprint Web Viewer for Cancer Imaging Research | Active |
| R21 | 2023 | Noemi Andor | H. Lee Moffitt Cancer Center and Research Institute | Engineering model-based systems to monitor and steer subclonal dynamics | Active |
| R21 | 2023 | Daniel Segre,
Ilija Dukovski,
Sergeevich Kirill Korolev | Boston University - Charles River Campus | Spatio-temporal mechanistic modeling of whole-cell tumor metabolism | Active |
| U24 | 2023 | Guilherme Del Fiol,
Kensaku Kawamoto | University of Utah | GARDE: Scalable Clinical Decision Support for Individualized Cancer Risk Management | Active |
| R21 | 2023 | Alejandro Bertolet | Massachusetts General Hospital | GPU-based SPECT Reconstruction Using Reverse Monte Carlo Simulations | Active |
| U24 | 2023 | David Hanauer | University of Michigan | Extending the Capabilities and Reach of EMERSE in Support of Cancer Research | Active |
| U24 | 2023 | Spyridon Bakas | Indiana University | Privacy-Aware Federated Learning for Breast Cancer Risk Assessment | Active |
| R21 | 2023 | Matthew Thompson | California Institute of Technology | Defining therapeutic strategies for boosting T-cell infiltration into cold tumors with spatial proteomics and machine learning | Active |
| U01 | 2022 | Brooke L. Fridley | H. Lee Moffitt Cancer Center and Research Institute | Analytical Tools for Studying the Tumor Microenvironment Leveraging Spatial Transcriptomics | Active |
| U24 | 2022 | Avi Ma'ayan | Icahn School of Medicine at Mount Sinai | ARCHS4: Massive Mining of Publicly Available RNA Sequencing Data | Active |
| U24 | 2022 | Veronica Miriam Rotemberg,
Kivanc Kose | Sloan - Kettering Institute Cancer Research | M-ISIC: A Multimodal Open-Source International Skin Imaging Collaboration Informatics Platform for Automated Skin Cancer Detection | Active |
| R21 | 2022 | Prateek Prasanna,
Chao Chen | State University New York Stony Brook | Computerized platform for interactive annotation and topological characterization of tumor associated vasculature for predicting response to immunotherapy in lung cancer | Complete |
| U24 | 2022 | Nikolaus Schultz,
Ethan Cerami,
Chris Sander | Sloan - Kettering Institute Cancer Research | The cBioPortal for Cancer Genomics | Active |
| U24 | 2022 | Rachel Karchin | Johns Hopkins University | OpenCRAVAT: Informatics Tools for High-Throughput Analysis of Cancer Mutations | Active |
| U01 | 2022 | Samuel Volchenboum | University of Chicago | GEARBOx - a multisite clinical trial matching tool for children with relapsed or refractory cancer | Active |
| R21 | 2022 | Travis Steele Johnson,
Jie Zhang | Indiana University- Purdue University at Indianapolis | A deep-transfer-learning framework to transfer clinical information to single cells and spatial locations in cancer tissues | Complete |
| R21 | 2022 | Jin Zhang | Washington University | Deep learning in cervical cancer radiogenomics | Complete |
| U01 | 2022 | Jacob Oleson | University of Iowa | Development of Small Area Interactive Risk Maps for Cancer Control Efforts | Active |
| U01 | 2022 | Patrick David Schloss,
Marcy J. Balunas | University of Michigan at Ann Arbor | muMS2: an open source R package for analyzing and integrating multi-omics datasets to improve early detection and understanding of colorectal cancer | Active |
| U24 | 2022 | Han Liang,
Rehan Akbani,
Gordon B. Mills | University of Texas MD Anderson Cancer Center | The Cancer Proteome Atlas: an Integrated Bioinformatics Resource for Functional Cancer Proteomic Data | Active |
| R21 | 2022 | Meghan Eileen McGrady | Cincinnati Children's Hospital Medical Center | A Novel Algorithm to Compute Adherence from Electronic Adherence Monitoring Devices | Complete |
| R21 | 2022 | Mara Meyer Epstein,
Feifan Liu | University of Massachusetts Medical School- Worcester | Identifying Recurrent Non-Hodgkin Lymphoma in Electronic Health Data | Active |
| R21 | 2022 | Travis J. Osterman,
Christine M. Micheel | Vanderbilt University Medical Center | Oncology Knowledge Rapid Alerts: Integrating Biomarker-Driven Clinical Decision Support for Therapy Selection at Point-of-Care | Complete |
| R21 | 2022 | Andrey Ivanov | Emory University | Predicting Actionable Cancer Vulnerabilities Enabled by Mutant-Directed Protein-Protein Interactions | Complete |
| R21 | 2022 | Margarida Barroso,
Uwe Kruger | Albany Medical College | Artificial Intelligence Enhanced Cancer Cell Classification Based Organelle Morphology and Topology | Complete |
| U01 | 2022 | Malgorzata Marjanska | University of Minnesota | Developing Informatics Tools for Optimized MRS for Brain Cancer Research | Active |
| U01 | 2022 | Pablo Gonzalez Camara | University of Pennsylvania | A Data-Driven Bioinformatics Platform for the Design and Analysis of Multiplexed Antibody-Based Cytometry Experiments in Cancer Research | Active |
| U24 | 2021 | Alessandro Sette,
Bjoern Peters | La Jolla Institute for Immunology | The Cancer Epitope Database And Analysis Resource | Active |
| U24 | 2021 | Vineet Bafna | University Of California, San Diego | Software and algorithms for elucidating the structure, function, and evolution of extrachromosomal DNA | Active |
| U24 | 2021 | Daniel Scott Marcus | Washington University | Sustaining the Integrative Imaging Informatics for Cancer Research (I3CR) Center | Active |
| U24 | 2021 | Jill Mesirov,
James Thomas Robinson | University Of California, San Diego | The Integrative Genomics Viewer (IGV) for Cancer Research | Active |
| U01 | 2021 | Michael Schatz | Johns Hopkins University | Integrative genomic and epigenomic analysis of cancer using long read sequencing | Complete |
| U01 | 2021 | Lydia Kavraki,
Gregory Lizee | Rice University | PROTEAN-CR: Proteomics Toolkit for Ensemble Analysis in Cancer Research | Complete |
| U24 | 2021 | Jingchun Zhu
David H Haussler | University of California Santa Cruz | Enhance UCSC Xena: extend interactive visualization to ultra-large-scale multi-omics data and integrate with analysis resources | Active |
| R21 | 2021 | Yong Zang | Indiana Unviersity | Curve-free phase I/II clinical trial designs for molecularly targeted agents and immunotherapy | Complete |
| R21 | 2021 | Li Zhang | University Of California, San Francisco | Computational approaches to unravel immune receptor sequencing for cancer immunotherapy | Complete |
| R21 | 2021 | Yen-Yi Ho | University Of South Carolina At Columbia | scDECO: A novel statistical framework to identify differential co-expression gene combinations systematically using single-cell RNA sequencing data | Complete |
| R21 | 2021 | Gavin Ha | Fred Hutchinson Cancer Research Center | Predicting transcriptional signatures and tumor subtypes from circulating tumor DNA | Complete |
| R21 | 2021 | Itai Yanai | New York University School Of Medicine | Inferring cell state tumor microenvironment maps by integrating single-cell and spatial transcriptomics | Complete |
| U01 | 2021 | Joshua Campbell,
Masanao Yajima | Boston University Medical Campus | Utilizing Bayesian modeling to improve mutational signature inference in large-scale datasets | Complete |
| U01 | 2021 | Giuseppe Narzisi | New York Genome Center | Advanced development of Lancet, an emerging tool for complex variant calling in cancer genomics | Complete |
| U24 | 2021 | Guergana Savova,
Harry Hochheiser,
Jeremy Warner | Boston Children's Hospital | Cancer Deep Phenotype Extraction from Electronic Medical Records | Renewed |
| U01 | 2021 | Guanghua Xiao | UT Southwestern Medical Center | Informatics Tools To Analyze And Model Whole Slide Image Data At The Single Cell Level | Complete |
| R21 | 2021 | Meliha Yetisgen | University of Washington | Extraction of Symptom Burden from Clinical Narratives of Cancer Patients using Natural Language Processing | Complete |
| R21 | 2021 | Lang Li | Ohio State University | An informatics bridge over the valley of death for cancer Phase I trials of drug-combination therapies | Complete |
| R21 | 2021 | Jiang Bian,
Yi Guo | University of Florida | Optimizing the Population Representativeness of Older Adults in Cancer Trials | Complete |
| U24 | 2021 | Christina Yung,
Lincoln D Stein | Ontario Institute For Cancer Research | Overture: A Multi-Scale Data Platform for Cancer Genomics Research | Active |
| U24 | 2020 | Jill Mesirov,
Pablo Tamayo | University of California, San Diego | GenePattern and GenePattern Notebook: Integrative 'Omic Analysis for Cancer Research | Complete |
| U01 | 2020 | Malachi Griffith | Washington University in St. Louis | Informatics Tools for Identification, Prioritization, and Clinical Application of Neoantigens | Complete |
| R21 | 2020 | Clemens Grassberger | Massachusetts General Hospital | A Computational Method to Calculate the Radiation Dose to Circulating Lymphocytes | Complete |
| U01 | 2020 | Elana Judith Fertig | Johns Hopkins University | Single-cell and imaging data integration software to spatially resolve the tumor microenvironment | Complete |
| U24 | 2020 | Philip Montgomery | Broad Institute, INC. | Advanced development of the Cancer Dependency Map portal (DepMap.org) | Complete |
| U01 | 2020 | Ken Chen | University of Texas MD Anderson Cancer Center | Informatics for Functional Integration of Heterogeneous Cancer Genome and Transcriptome Sequencing Data | Complete |
| U24 | 2020 | Helen Elizabeth Parkinson,
Terrence Meehan | European Molecular Biology Laboratory | Patient Derived Cancer Model (PDCM) Finder | Complete |
| U01 | 2020 | Amanda E Randles | Duke University | Technology for efficient simulation of cancer cell transport | Complete |
| R21 | 2020 | Jennifer Ellen Beane,
Vijaya B Kolachalama | Boston University Medical Campus | PRISTINE: Pre-cancer histology identification of Endobronchial biopsies using deep learning | Complete |
| R21 | 2020 | Hildreth Robert Frost | Dartmouth College | Cancer-specific gene set testing | Complete |
| R01 | 2020 | Chun-Wei Chen | Beckman Research Institute/City of Hope | Integrative Analyses of Saturation CRISPR Protein Scan | Complete |
| U24 | 2020 | Kooresh Isaac Shoghi,
Daniel Scott Marcus | Washington University | Development of an Open-Source Preclinical Imaging Informatics Platform for Cancer Research | Renewed |
| UE5 | 2020 | Jeffery T Leek,
Jeremy Goecks,
Karriem Sadot Watson,
Sarah J Wheelan | Johns Hopkins University,
Oregon Health & Science University | Scalable multi-mode education to increase use of ITCR tools by diverse analysts | Active |
| U24 | 2020 | Greg Caporaso | Northern Arizona University | Advancing Our Understanding of Cancer and the Human Microbiome with QIIME 2 | Complete |
| U24 | 2020 | Benjamin Raphael | Princeton University | Comprehensive and Robust Tools for Analysis of Tumor Heterogeneity and Evolution | Complete |
| U01 | 2020 | Satish Viswanath,
Pallavi Tiwari | Case Western Reserve University | RadxTools for Assessing Tumor Treatment Response on Imaging | Complete |
| U24 | 2020 | James Eddy,
Jacob Albrecht,
Paul Christopher Boutros | Sage Bionetworks | Advancing Method Benchmarking and Data Sharing Through Crowd-Sourced Competitions in Cancer Research | Complete |
| R21 | 2020 | Subhajyoti De | Rutgers Cancer Institute of New Jersey | Inference of Tumor Growth Dynamics Using Genomic Data | Complete |
| U24 | 2019 | Obi Griffith | Washington University | Standardized and Genome-Wide Clinical Interpretation of Complex Genotypes for Cancer Precision Medicine | Complete |
| U01 | 2019 | Bruno De Man | General Electric Global Research Center | Open-Access X-Ray and CT Simulation Toolkit for Research in Cancer Imaging and Dosimetry | Complete |
| R21 | 2019 | Jin Chen,
Guo-Qiang Zhang,
Baowei Fei | University of Kentucky,
The University Texas at Dallas | STAN-CT: Standardization and Normalization of CT images for Lung Cancer Patients | Complete |
| R21 | 2019 | Tianxi Cai | Harvard University School of Public Health | Semi-supervised Algorithms for Risk Assessment with Noisy EHR Data | Complete |
| R21 | 2019 | Suvra Pal,
Leili Shahriyari,
Souvik Roy | University of Texas Arlington,
University of Massachusetts Amherst | Data-Driven QSP Software for Personalized Colon Cancer Treatment | Complete |
| U01 | 2019 | Jun Kong,
Fusheng Wang | Georgia State University | Computational Pathology Software for Integrative Cancer Research with Three-Dimensional Digital Slides | Complete |
| U01 | 2019 | Spyridon Bakas | University of Pennsylvania | The Federated Tumor Segmentation (FeTS) Platform: An Intuitive Tool Facilitating Secure Multi-Institutional Collaboration | Complete |
| U24 | 2019 | John Quackenbush | Harvard School of Public Health | WebMeV: A Robust Platform for Intuitive Genomic Data Analysis | Complete |
| U01 | 2019 | Melissa Cline | University of California, Santa Cruz | Eliminating Variants of Uncertain Significance in BRCA1, BRCA2 and Beyond | Complete |
| U01 | 2019 | Daniel Rubin,
Jayashree Kalpathy-Cramer | Stanford University,
Massachusetts General Hospital | Distributed Learning of Deep Learning Models for Cancer Research | Complete |
| U01 | 2019 | Wenyuan Li | University of California Los Angeles | Informatics Resources for Liquid Biopsy Research | Complete |
| U24 | 2019 | Clifford Meyer | Dana-Farber Cancer Institute | Developing Informatics Technologies to Model Cancer Gene Regulation | Complete |
| U01 | 2019 | Andrew Janowczyk,
Anant Madabhushi | Case Western Reserve University | HistoTools: A Suite of Digital Pathology Tools for Quality Control, Annotation and Dataset Identification | Complete |
| U24 | 2018 | Jill Mesirov | University of California, San Diego | Supporting and Evolving Gene Set Enrichment Analysis and the Molecular Signatures Database for Cancer Research | Complete |
| U01 | 2018 | Jeremy Warner | Vanderbilt University Medical Center | Network Analysis for a Data-Driven Approach to Cancer Care | Complete |
| U24 | 2018 | Jeremy Goecks,
Michael Schatz | Oregon Health and Science University,
Johns Hopkins University | A Federated Galaxy for user-friendly large-scale cancer genomics research | Complete |
| U01 | 2018 | Linda Shapiro,
Joann Elmore | University of Washington | A Unified Machine Learning Package for Cancer Diagnosis | Complete |
| U24 | 2018 | Alexej Abyzov | Mayo Clinic Rochester | Detection of somatic, subclonal and mosaic CNVs from sequencing | Complete |
| U24 | 2018 | Bruce Faddegon | University of California, San Francisco | The TOPAS Tool for Particle Simulation, a Monte Carlo Simulation Tool for Physics, Biology and Clinical Research | Complete |
| U01 | 2018 | Lee Cooper,
Christopher Flowers,
Metin Gurcan | Emory University ,
Ohio State University | Informatics Tools for Quantitative Digital Pathology Profiling and Integrated Prognostic Modeling | Complete |
| U24 | 2017 | Guilherme Del Fiol,
Kensaku Kawamoto | University of Utah | Scalable Clinical Decision Support for Individualized Cancer Risk Management | Complete |
| U24 | 2017 | Ian Foster | University of Chicago | Building Protected Data Sharing Networks to Advance Cancer Risk Assessment and Treatment | Complete |
| U24 | 2017 | Nikolaus Schultz,
Ethan Cerami,
Chris Sander | Sloan Kettering Institute for Cancer Research | The cBioPortal for Cancer Genomics | Complete |
| U24 | 2017 | David Hanauer | University of Michigan | Advanced Development and Dissemination of EMERSE for Cancer Phenotyping from Medical Records | Complete |
| U24 | 2017 | Fred Prior,
Joel Saltz,
Ashish Sharma | University of Arkansas,
Stony Brook University,
Emory University | TCIA Sustainment and Scalability - Platforms for Quantitative Imaging Informatics in Precision Medicine | Complete |
| U24 | 2017 | Ian Holmes,
Lincoln Stein | University of California Berkeley | Developing the JBrowse Genome Browser to Visualize Structural Variants and Cancer Genomics Data | Complete |
| U24 | 2016 | Hua Xu,
Ping Yang | University of Texas Health Sci. Center, Houston,
Mayo Clinic - Jacksonville, Florida | Advancing Cancer Pharmacoepidemiology Research Through EHRs and Informatics | Complete |
| U24 | 2016 | Jill Mesirov,
James Robinson | University of California, San Diego | The Integrative Genomics Viewer (IGV): Visualization Supporting Cancer Research | Complete |
| U24 | 2016 | Gabor Marth,
Aaron Quinlan | University of Utah | Monitoring Tumor Subclonal Heterogeneity Over Time and Space | Complete |
| U24 | 2016 | Han Liang,
Gordon Mills | University of Texas MD Anderson Cancer Center | TCPA: an Integrated Bioinformatics Resource for Functional Cancer Proteomic Data/a> | Complete |
| U24 | 2015 | Anant Madabhushi,
Metin Nafi Gurcan ,
Anne Martel | Case Western Reserve University,
Ohio State University,
University of Toronto | Pathology Image Informatics Platform for Visualization, Analysis and Management | Complete |
| U24 | 2014 | Martin Morgan | Roswell Park Cancer Institute | Cancer Genomics: Integrative and Scalable Solutions in R / Bioconductor | Renewed |
| U24 | 2014 | Trey Ideker | University of California, San Diego | NDEx - the Network Data Exchange, A Network Commons for Biologists | Complete |
| U24 | 2013 | Brian Haas | Broad Institute | Trinity: Transcriptome Assembly for Genetic and Functional Analysis of Cancer | Complete |
| R21 | 2019 | Eliezer Van Allen | Dana-Farber Cancer Institute | A Statistical Framework to Systematically Characterize Cancer Driver Mutations in Noncoding Genomic Regions | Complete |
| R21 | 2019 | Joshua Campbell | Boston University Medical Campus | Enhanced Deconvolution and Prediction of Mutational Signatures | Complete |
| R21 | 2019 | Paul Marjoram | University of Southern California | Conservation and Functional-Characterization of Tumor Methylation Sites | Complete |
| R21 | 2019 | Emilie Roncali | University of California at Davis | Personalized Dosimetry for Liver Cancer Radioembolization Using Fluid Dynamics Simulation | Complete |
| R21 | 2019 | Fuyong Xing,
Toby Cornish | University of Colorado Denver | Development and Dissemination of KiNet: A Novel Imaging Informatics Tool for Gastrointestinal and Pancreatic Neuroendocrine Tumors | Complete |
| R21 | 2018 | Guo-Qiang Zhang,
Licong Cui | University of Kentucky Research Foundation | An Ontology-driven Faceted Query Engine for the Kentucky Cancer Registry | Complete |
| R21 | 2018 | Kristen Naegle | University of Virginia | Inferring Kinase Activity Profiles from Phosphoproteomic Data | Complete |
| R21 | 2018 | Li-Xuan Qin | Sloan Kettering Institute for Cancer Research | Statistical Evaluation and Selection of Normalization Methods for microRNA Sequencing Data in Cancer Biomarker Studies | Complete |
| R21 | 2018 | Giuseppe Narzisi | New York Genome Center | Somatic variant calling and phasing using colored de Bruijn graphs in heterogeneous tumors | Complete |
| R21 | 2018 | Anjishnu Banerjee | Medical College of Wisconsin | Bayesian learning algorithms for identifying and classifying heterogeneity of cell types in variety of solid tumors | Complete |
| U01 | 2018 | Xiaole Shirley Liu | Dana-Farber Cancer Institute | Bioinformatics Technology to Characterize Tumor Infiltrating Immune Repertoires | Complete |
| U01 | 2018 | Kai Tan | Children's Hospital of Philadelphia | Tools for annotating mutations in the 3D cancer genome | Complete |
| R21 | 2018 | Min Jin Ha,
Veerabhadran Baladandayuthapani | University of Texas MD Anderson Cancer Center,
University of Michigan | Proteomic-based integrated subject-specific networks in cancer | Complete |
| R21 | 2018 | Corey W. Arnold | University of California, Los Angeles | Predicting the Presence of Clinically Significant Prostate Cancer using Multiparametric MRI and MR-US Fusion Biopsy | Complete |
| Contract | 2017 | Timothy Olsen,
Daniel Marcus | Radiologic, Inc.
Washington University in St. Louis | FDA Compliant Imaging Informatics for Cancer Research | Complete |
| R21 | 2017 | Nathalie Pochet | Brigham and Women's Hospital | Integrative Genomic Framework for Dissecting Regulatory Mechanisms Underlying Hepatocellular Carcinoma | Complete |
| Contract | 2017 | Trinity Urban,
Gordon Harris | Precision Imaging Metrics,
Harvard Medical School | Cloud-Hosted Clinical Trial Imaging Assessment and Workflow Management System | Complete |
| R21 | 2017 | Samir Parekh | Icahn School of Medicine at Mount Sinai | A network-based approach for personalized treatment of Multiple Myeloma | Complete |
| R21 | 2017 | Simina Boca | Georgetown University | CGDnet: Cancer Gene Drug Network: Using patient-specific drug-gene networks for recommending targeted cancer therapies | Complete |
| U01 | 2017 | Vincent Carey | Brigham and Women's Hospital | Accelerating Cancer Genomics with Cloud-Scale Bioconductor | Complete |
| U01 | 2017 | Daniel Crichton,
Raja Mazumder | Jet Propulsion Laboratory,
George Washington University | Integration of Comprehensive Cancer Mutation and Expression-Associated Data for Biomarker Evaluation and Discovery | Complete |
| R01 | 2017 | Jie Liang,
Yan-Yuan Tseng | University of Illinois at Chicago,
Wayne State University | Database and Tools for Functional Inference and Mechanistic Insight into Somatic Cancer Mutations | Complete |
| R21 | 2017 | William Evan Johnson | Boston University | An interactive analysis toolkit for single cell RNA-seq in cancer research | Complete |
| R21 | 2016 | Xiaodong Wu | University of Iowa | Developing Enabling PET-CT Image Analysis Tools for Predicting Response in Radiation Cancer Therapy | Complete |
| R21 | 2016 | Lydia Kavraki,
Gregory Lizee | Rice University | Structure-Based Selection of Tumor-Antigens for T-Cell Based Immunotherapy | Complete |
| R21 | 2016 | Dongjun Chung,
Linda Kelemen | Medical University of South Carolina | Algorithms for Literature-Guided Multi-Platform Identification of Cancer Subtypes | Complete |
| U01 | 2016 | Obi Griffith | Washington University in St. Louis | Development of Informatics Resources for Interpretation of Clinically Actionable Variants in Cancer | Complete |
| U01 | 2016 | Srinivas Chakra Chennubhotla,
Daryl Sarachan,
Lansing Taylor | University of Pittsburgh | Informatics Tools for Tumor Heterogeneity in Multiplexed Fluorescence Images | Complete |
| U01 | 2016 | Xinshu Grace Xiao | University of California, Los Angeles | Informatics Tools for Single-Nucleotide Analysis of Cancer RNA-Seq | Complete |
| U24 | 2016 | Timothy Griffin | University of Minnesota | A Galaxy-Based Multi-Omic Informatics Hub for Cancer Researchers | Complete |
| U24 | 2016 | Daniel Marcus,
Richard Wahl | Washington University in St. Louis | Integrative Imaging Informatics for Cancer Research | Complete |
| U24 | 2016 | Helen Parkinson | European Molecular Biology Laboratory | The PDX Integrator - Re-Purposing KOMP2 Informatics to Widely Disseminate Data from Patient Derived Xenografts | Complete |
| U24 | 2016 | Rachel Karchin | Johns Hopkins University | Informatics Tools for High-Throughput Analysis of Cancer Mutations | Complete |
| U24 | 2015 | Christos Davatzikos,
Despina Kontos | University of Pennsylvania | Cancer Imaging Phenomics Software Suite: Application to Brain and Breast Cancer | Complete |
| U24 | 2015 | John Weinstein,
Bradley Broom | University of Texas MD Anderson Cancer Center | Next-Generation Clustered Heat Maps for Fluent, Interactive Exploration of Omic Data | Complete |
| U24 | 2015 | David Andrew Gutman,
Lee Cooper | Emory University | Advanced Development of an Open-source Platform for Web-based Integrative Digital Image Analysis in Cancer | Complete |
| U24 | 2015 | Jill Mesirov | University of California, San Diego | GenePattern Notebooks for Cancer Research | Complete |
| U24 | 2015 | John Quackenbush,
Hugo Aerts | Dana-Farber Cancer Institute | Quantitative Radiomics System Decoding the Tumor Phenotype | Complete |
| U01 | 2015 | Lauren Jean O'Donnell | Harvard Medical School | Open Source Diffusion MRI Technology for Brain Cancer Research | Complete |
| U01 | 2015 | Kun Huang | Ohio State University | Informatics Links between Histological Features and Genetics in Cancer | Complete |
| U01 | 2015 | Michael Wigler,
Alexander Krasnitz | Cold Spring Harbor Laboratory | Computational Framework for Single-Cell Genomics of Tumors | Complete |
| U24 | 2015 | Gordon Harris | Harvard Medical School | Extensible Open-Source Zero-Footprint Web Viewer for Oncologic Imaging Research | Complete |
| U01 | 2014 | Benjamin Berman | Cedars-Sinai Medical Center | Software Tools For Regulatory Analysis of Large Cancer Methylome Datasets | Complete |
| U01 | 2014 | Bobbie-Jo Mary Webb-Robertson | Pacific Northwest National Laboratory | Interactive Informatics Resource for Research-driven C | Complete |
| U24 | 2014 | Bruce Rosen,
Jayashree Kalpathy-Cramer | Massachusetts General Hospital | Informatics Tools for Optimized Imaging Biomarkers for Cancer Research & Discovery | Complete |
| U24 | 2014 | Joel Saltz | Stony Brook University | Tools to Analyze Morphology and Spatially Mapped Molecular Data | Complete |
| U24 | 2014 | Guergana Savova | Boston Children's Hospital,
University of Pittsburgh | Cancer Deep Phenotyping Extraction from Electronic Medical Records | Complete |
| R01 | 2014 | Laura Rozek,
Maureen Sartor | University of Michigan | Integrative Epigenomic/Genomic Profiling and Biomarker Discovery in HPV+ and HPV- | Complete |
| U01 | 2014 | Guoqian Jiang | Mayo Clinic - Rochester, Minnesota | caCDE-QA: A Quality Assurance Platform for Cancer Study Common Data Elements | Complete |
| U01 | 2014 | Hong Yu | University of Massachusetts Medical School | EMR Adverse Drug Event Detection for Pharmacovigilance | Complete |
| U01 | 2014 | Jingshan Huang | University of South Alabama | OmniSearch: A Semantic Search Tool for Discovering MicroRNAs' Critical Roles in Human Cancer | Complete |
| U01 | 2013 | Shirley Liu | Dana-Farber Cancer Institute | Developing Informatics Technologies to Model Cancer | Complete |
| U01 | 2013 | Rachel Karchin | Johns Hopkins University | Informatics Tools for High-Throughput Analysis of Cancer Mutations | Complete |
| U01 | 2013 | Elmer Bernstam,
Funda Meric-Bernstam | University of Texas MD Anderson Cancer Center,
University of Texas Health Sci. Center, Houston | Informatics to Enable Routine Personalized Cancer Therapy | Complete |
| U24 | 2013 | Michael Becich | University of Pittsburgh | Advanced Development of TIES-Enhancing Access to Tissue for Cancer Research | Complete |
| U24 | 2013 | David Haussler | University of California, Santa Cruz | Cloud Based Resource for Data Hosting, Visualization and Analysis Using UCSC Cancer Genomics Browser | Complete |
| R01 | 2013 | Joshua Stuart | University of California, Santa Cruz | ESCE: Discovering Molecular Processes | Complete |
| U24 | 2013 | Ron Kikinis,
Andrey Fedorov | Brigham and Women's Hospital,
Harvard Medical School | Quantitative Image Informatics for Cancer Research (QIICR) | Complete |
| R01 | 2013 | Hiroyuki Yoshida | Massachusetts General Hospital | Cloud-Computer-Aided Diagnostic Imaging Decision Support System | Complete |
| R01 | 2013 | William Noble | University of Washington | Interpreting Massive Genomic Data Sets via Summarization | Complete |
| U01 | 2011 | John Quackenbush | Dana-Farber Cancer Institute | MeV: Software for Next Generation Genomic Data Analysis | Complete |
